The difference will be:
* The grades from this semester [QM2, Solid State, Adv. Lab]
* A publication submitted to AJP & hopefully published summer-ish
* Full time research (and perhaps even a class) over summer
* Another semester (taking grad classes, doing research with one or two additional groups, retaking PGRE, etc)
I'm assuming the following for a hypothetical amendments to my profile:
Physics GPA: ~3.8 <-- Thinking about Grad E&M plus atomic and/or electronics
Overall GPA: ~3.3
PGRE: ~ 75+%
Additional Research: ~10 months w/ 1-2 additional groups. Both quant comp (atom trapping &/or josephson junctions).
Publications: Assume only the pub I'm working on now. Senior thesis will likely not be published.
Assuming I pretty much get straight A's and bust my ass with the research, what chances do people think I'll have? My GPA is irreparably damaged, but I figure an A in E&M might quell some of the unsettling feelings about my straight B's in math classes. I also want to get more electronics experience and apply to EE PhD/MS programs.
Now, for the reason this is in the School Selection thread. I might only be looking at schools in Michigan. Unfortunately, unless I do some miracle networking the Physics PhD is out of my reach (feel free to disagree

Also, My gf is likely going to UM-AA, so maybe I could get to know some of the faculty... maybe even impress them slightly?

Thanks for your input guys